Project page for ctwas

Last updated: 2023-10-21

Checks: 2 0

Knit directory: ctwas_applied/

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Repository version: 29b99ed

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Untracked files:
    Untracked:  gwas.RData
    Untracked:  ld_R_info.RData
    Untracked:  z_snp_pos_ebi-a-GCST004131.RData
    Untracked:  z_snp_pos_ebi-a-GCST004132.RData
    Untracked:  z_snp_pos_ebi-a-GCST004133.RData
    Untracked:  z_snp_pos_scz-2018.RData
    Untracked:  z_snp_pos_ukb-a-360.RData
    Untracked:  z_snp_pos_ukb-d-30780_irnt.RData

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    Modified:   analysis/transition_multigroup.Rmd

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File	Version	Author	Date	Message
html	29b99ed	wesleycrouse	2023-09-28	adding preharmonization
html	3384c1b	wesleycrouse	2023-09-14	fixing typo
html	7edeea5	wesleycrouse	2023-09-14	updating user guide for new harmonization option
Rmd	3147f25	wesleycrouse	2023-09-12	adding user guide for multigroup branch
html	3147f25	wesleycrouse	2023-09-12	adding user guide for multigroup branch
html	f2b5c01	wesleycrouse	2023-09-05	adding region merging section to the transition document
Rmd	a764e3d	wesleycrouse	2023-08-31	ctwas user guide
html	a764e3d	wesleycrouse	2023-08-31	ctwas user guide
html	63030d5	wesleycrouse	2023-08-18	updating variance prior results and adding fine mapping
html	ce02b6f	wesleycrouse	2023-08-18	fixing variance prior report
html	1632c6b	wesleycrouse	2023-07-27	fixing gamma prior results
Rmd	05b0117	wesleycrouse	2023-07-27	adding results for inv-gamma prior on variance
html	05b0117	wesleycrouse	2023-07-27	adding results for inv-gamma prior on variance
html	b1e0087	wesleycrouse	2023-06-20	updating simulation plot
html	45e6c0d	wesleycrouse	2023-06-13	updating MR locus results with complete LD
html	d17186e	wesleycrouse	2023-06-08	updating MRLocus investigation
html	fa29d7e	wesleycrouse	2023-06-02	updating revisions
html	7f6fbc8	wesleycrouse	2023-05-15	fixing issue with plots
Rmd	3e493c9	wesleycrouse	2023-05-15	adding detailed MRLocus results
html	3e493c9	wesleycrouse	2023-05-15	adding detailed MRLocus results
html	dba8c0e	wesleycrouse	2023-05-14	updating simulation plot with MRLocus
html	c538341	wesleycrouse	2023-04-26	fixing issue with ncausal plot
html	4b1e3c4	wesleycrouse	2023-04-11	SMR for POLK
html	712ed61	wesleycrouse	2023-04-06	comparison with other methods at selected loci
html	1cc714a	wesleycrouse	2023-03-23	fixing version issue and adding enrichment
html	2e68699	wesleycrouse	2023-03-23	cleanup
html	ebdf8f6	wesleycrouse	2023-03-23	removing legend from plots
Rmd	423951a	wesleycrouse	2023-03-23	breaking out all tissue results to separate report
html	423951a	wesleycrouse	2023-03-23	breaking out all tissue results to separate report
html	ff5ddd1	wesleycrouse	2023-03-22	adding all tissue results
html	fe2dd30	wesleycrouse	2023-03-21	all tissue results!
html	68f8393	wesleycrouse	2023-02-10	cleaning up plots
html	4e583b3	wesleycrouse	2023-02-07	adding method to figure
html	4c8211b	wesleycrouse	2023-02-07	figures for all simulations
html	e35c1e1	wesleycrouse	2023-02-06	draft figure
html	9ddf086	wesleycrouse	2023-02-06	adding TWAS results
html	83ed361	wesleycrouse	2023-02-06	adding individual tissue results and separate parameter results
html	903d30e	wesleycrouse	2023-02-04	removing duplicated section
html	c688c02	wesleycrouse	2023-02-04	updating reports
html	dc75a78	wesleycrouse	2023-02-02	formating for reports

Project page for ctwas_applied

Introduction

UK Biobank metabolites

Liver weights

Whole_Blood weights

Additional analyses (Direct bilirubin (quantile) - Liver)

Heritability analyses for metabolites

Analyses with known gene annotations

Multiweight and All Weight Analyses

Simulation Results

Transition Documents